{% extends "layout.html" %}
{% block head %}
<style>
.nav-tabs.amp-header {
  border-bottom:none !important;
}

.card-header.amp-header {
  border-bottom:none !important;
}
.nav-tabs.amp-header .nav-link.active {
  background-color:lightsteelblue;
  border-bottom:lightsteelblue;
}

.tab-content.amp-body {
  background-color:lightsteelblue;
}

@media print {
   .tab-content > .tab-pane {
    display: block !important;
    opacity: 1 !important;
    visibility: visible !important;
		margin-bottom: 2em !important;
		page-break-inside: avoid;
  }
  .nav-tabs {
    display:none !important;
    visibility:hidden !important;
  }
  .tab-content.amp-body {
    background-color:transparent !important;
  	border:None !important;
  }
}
@media only screen and (max-width: 600px) {
	.jumbotron img {
		width:100%
	}
}
</style>

{% endblock %}

{% block content %}
<div class="col-sm-1"></div>
<div class="col-sm-10">

	<div class="jumbotron" style="background:rgba(0,0,0,0.0); padding:0px" >
		<div id='jumbotron_content' >

				<div class='card text-center mb-2'>
					<div class='card-header'>
              {% if report_data['report_display_name'] != '' %}
      						<h5>{{report_data['report_display_name']}}</h5>
              {% endif %}
  						<h5>CRISPResso2 run information</h5>
						<ul class="nav nav-tabs justify-content-center card-header-tabs" id="log-tab" role="tablist">
						  <li class="nav-item">
						    <a class="nav-link active" id="log_aln-tab" data-toggle="tab" href="#log_aln" role="tab" aria-controls="log_aln" aria-selected="true">Alignment statistics</a>
						  </li>
						  <li class="nav-item">
						    <a class="nav-link" id="log_params-tab" data-toggle="tab" href="#log_params" role="tab" aria-controls="log_params" aria-selected="false">Run Parameters</a>
						  </li>
						</ul>
					</div>
					<div class='card-body'>
            <div class='tab-content'>
  					  <div class="tab-pane fade show active" id="log_aln" role="tabpanel">
						  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_1a']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_1a']}}.png" width='40%' ></a>
    						<label class="labelpadding">{{report_data['fig_captions']['plot_1a']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas']['plot_1a'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
  						</div>
  					  <div class="tab-pane fade text-left" id="log_params" role="tabpanel">
                <p>CRISPResso version: {{report_data['run_data']['version']}}</p>
                <p>Run completed: {{report_data['run_data']['end_time_string']}}</p>
                <p>Amplicon sequence: <pre class='pre-scrollable'>{{report_data['run_data']['args']['amplicon_seq']}}</pre></p>
                {% if report_data['run_data']['args']['guide_seq'] != '' %}
                  <p>Guide sequence: <pre class='pre-scrollable'>{{report_data['run_data']['args']['guide_seq']}}</pre></p>
                {% endif %}
                <p>Command used: <pre class='pre-scrollable'>{{report_data['command_used']}}</pre></p>
                <p>Parameters: <pre class='pre-scrollable'>{{report_data['params']}}</pre></p>
		<p class='text-center m-0'><small><a href="{{report_data['crispresso_data_path']}}{{report_data['run_data']['log_filename']}}">Running log</a></small></p>
  						</div>
            </div>
					</div>
				</div>

				<div class='card text-center mb-2'>
					<div class='card-header'>
						<h5>Allele assignments</h5>
						<ul class="nav nav-tabs justify-content-center card-header-tabs" id="aln-tab" role="tablist">
						  <li class="nav-item">
						    <a class="nav-link active" id="aln_pie-tab" data-toggle="tab" href="#aln_pie" role="tab" aria-controls="aln_pie" aria-selected="true">Piechart</a>
						  </li>
						  <li class="nav-item">
						    <a class="nav-link" id="aln_bar-tab" data-toggle="tab" href="#aln_bar" role="tab" aria-controls="aln_bar" aria-selected="false">Barplot</a>
						  </li>
    					{% if report_data['fig_locs']['plot_1d'] %}
						  <li class="nav-item">
						    <a class="nav-link" id="aln_dsODN-tab" data-toggle="tab" href="#aln_dsODN" role="tab" aria-controls="aln_dsODN" aria-selected="false">dsODN</a>
						  </li>
              {% endif %}
						</ul>
					</div>
					<div class='card-body'>
						<div class="tab-content" id="tabContent">
						  <div class="tab-pane fade show active" id="aln_pie" role="tabpanel" aria-labelledby="aln_pie-tab">
							  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_1b']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_1b']}}.png" width='50%' ></a>
								<label class="labelpadding">{{report_data['fig_captions']['plot_1b']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas']['plot_1b'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						  <div class="tab-pane fade" id="aln_bar" role="tabpanel" aria-labelledby="aln_bar-tab">
							  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_1c']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_1c']}}.png" width='40%' ></a>
								<label class="labelpadding">{{report_data['fig_captions']['plot_1c']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas']['plot_1c'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
    					{% if report_data['fig_locs']['plot_1d'] %}
						  <div class="tab-pane fade" id="aln_dsODN" role="tabpanel" aria-labelledby="aln_dsODN-tab">
							  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_1d']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_1d']}}.png" width='40%' ></a>
								<label class="labelpadding">{{report_data['fig_captions']['plot_1d']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas']['plot_1d'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
              {% endif %}
						</div>

					</div>
				</div> {# end card #}

        {# start global coding sequence report #}
					{% if report_data['fig_locs']['plot_5a'] %}
						<div class='card text-center mb-2'>
							<div class='card-header'>
    						<h5>Global frameshift analysis</h5>
							</div>
					<div class='card-body'>
						<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_5a']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_5a']}}.png" width='70%' ></a>
							<label class="labelpadding">{{report_data['fig_captions']['plot_5a']}}</label>
						  {% for (data_label,data_path) in report_data['fig_datas']['plot_5a'] %}
						  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
              {% endfor %}
						</div>
					</div>
					{% endif %}

					{% if report_data['fig_locs']['plot_6a'] %}
						<div class='card text-center mb-2'>
							<div class='card-header'>
    						<h5>Global frameshift mutagenesis profiles</h5>
							</div>
					<div class='card-body'>
						<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_6a']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_6a']}}.png" width='95%' ></a>
							<label class="labelpadding">{{report_data['fig_captions']['plot_6a']}}</label>
						  {% for (data_label,data_path) in report_data['fig_datas']['plot_6a'] %}
						  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
              {% endfor %}
						</div>
					</div>
					{% endif %}

					{% if report_data['fig_locs']['plot_8a'] %}
						<div class='card text-center mb-2'>
							<div class='card-header'>
    						<h5>Global splicing analysis</h5>
							</div>
					<div class='card-body'>
						<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_8a']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs']['plot_8a']}}.png" width='80%' ></a>
							<label class="labelpadding">{{report_data['fig_captions']['plot_8a']}}</label>
						  {% for (data_label,data_path) in report_data['fig_datas']['plot_8a'] %}
						  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
              {% endfor %}
						</div>
					</div>
					{% endif %}
          {# end of global coding sequence analysis #}


					{% if report_data.amplicons|length == 1 %}
          <div> {# if only one amplicon, just a normal div #}
          {% else %}
	        {# If there is more than one amplicon, print a navigation to show each amplicon #}
					<p>Reads are aligned to each amplicon sequence separately. Quantification and visualization of these reads are shown for each amplicon below:</p>
				<div id='amplicons-card' class='card text-center mb-2'>
					<div class='card-header amp-header'>
						<h5>Amplicons</h5>
						<ul class="nav nav-tabs amp-header card-header-tabs" id="nav-tab" role="tablist">
							{% for amplicon_name in report_data.amplicons %}
								{% if loop.index0 == 0 %}
								  <li class="nav-item">
								    <a class="nav-link active" id="pills_{{amplicon_name}}_tab" data-toggle="tab" href="#div_{{amplicon_name}}" role="tab" aria-controls="div_{{amplicon_name}}" aria-selected="true">{{amplicon_name}}</a>
								  </li>
								{% else %}
								<li class="nav-item">
									<a class="nav-link" id="pills_{{amplicon_name}}_tab" data-toggle="tab" href="#div_{{amplicon_name}}" role="tab" aria-controls="div_{{amplicon_name}}" aria-selected="false">{{amplicon_name}}</a>
								</li>
								{% endif%}
							{% endfor %}
						</ul>
				</div>
					{% endif %} {# end if report contains more than one amplicon #}


					{% if report_data.amplicons|length == 1 %} {# if only one amplicon, just a normal div #}
					<div>
					{% else %}
					<div class="tab-content pt-3 pr-3 pl-3 amp-body card-body" id="nav-tabContent">
					{% endif %}

					{% for amplicon_name in report_data.amplicons %}
						{% if report_data.amplicons|length == 1 %} {# if only one amplicon, just a normal div #}
						<div>
						{% elif loop.index0 == 0 %} {# if more than one amplicon, and the first, this is the active one #}
						<div class="tab-pane fade show active" id="div_{{amplicon_name}}" role="tabpanel" aria-labelledby="pills_{{amplicon_name}}_tab">
            <div class="d-none d-print-block"><h3>Reads aligning to {{amplicon_name}}</h3></div> {# this bit appears in print mode #}
						{% else %} {# otherwise inactive tab #}
						<div class="tab-pane fade" id="div_{{amplicon_name}}" role="tabpanel" aria-labelledby="pills_{{amplicon_name}}_tab">
            <div class="d-none d-print-block"><h3>Reads aligning to {{amplicon_name}}</h3> </div>{# this bit appears in print mode #}
						{% endif %}

      				<div class='card text-center mb-2'>
      					<div class='card-header'>
									{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
      						<h5>Nucleotide composition</h5>
									{% else %}
      						<h5>Nucleotide composition for {{amplicon_name}}</h5>
									{% endif %}
      					</div>
      					<div class='card-body'>
						{% if report_data['fig_locs'][amplicon_name]['plot_2a'] %}
<div class='div_zoom_outer d-none d-md-block' style="height:100px;border:1px solid #DDDDDD;position:relative">
	<div id="zoomview_nucs_{{amplicon_name}}" style="position:absolute;left:0;height:100%;width:100%;background-image: url({{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_2a']}}.png);background-size:auto 100%;background-repeat:no-repeat;"></div>
  <div class="d-lg-none" style="overflow-x:scroll;overflow-y:hidden;position:absolute;width:100%;height:100%">
	  <img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_2a']}}.png" style='height:100%'>
  </div>
</div>
<div style='position:relative;display:inline-block;width:95%'>
	<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_2a']}}.pdf">
    <div id='zoomlens_nucs_{{amplicon_name}}' class="d-none d-lg-block" style='float: left;position: absolute;left: 0px;top: 0px;z-index: 1000;border: 1px solid #DDDDDD;height:100%;width:10%'></div>
    <img id='tozoom_nucs_{{amplicon_name}}' src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_2a']}}.png" width='100%' style='position:relative'>
  </a>
</div>

<label class="labelpadding">
  <span class='d-none d-md-block'>Hover your mouse over the bottom image to zoom in on a specific region.</span><br>
  {{report_data['fig_captions'][amplicon_name]['plot_2a']}}
</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_2a'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
						{% endif %}

						{% if report_data['sgRNA_based_fig_names'][amplicon_name] and  report_data['sgRNA_based_fig_names'][amplicon_name]['2b']%}
  							<div>
  								{% for fig_name in report_data['sgRNA_based_fig_names'][amplicon_name]['2b'] %}
								<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.png" width='95%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name][fig_name]}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name][fig_name] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
  								{% endfor %}
  							</div>
							{% endif %}
            </div>
          </div> {# end card #}

  				<div class='card text-center mb-2'>
  					<div class='card-header'>
									{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
      						<h5>Modification lengths</h5>
									{% else %}
      						<h5>Modification lengths for {{amplicon_name}}</h5>
									{% endif %}
  						<ul class="nav nav-tabs justify-content-center card-header-tabs" id="aln-tab" role="tablist">
						{% if report_data['fig_locs'][amplicon_name]['plot_3a'] %}
  						  <li class="nav-item">
						  <a class="nav-link active" data-toggle="tab" href="#{{amplicon_name}}_3a" role="tab" aria-controls="{{amplicon_name}}_3a" aria-selected="true">Summary</a>
  						  </li>
            {% endif %}
						{% if report_data['fig_locs'][amplicon_name]['plot_3b'] %}
  						  <li class="nav-item">
						  <a class="nav-link" data-toggle="tab" href="#{{amplicon_name}}_3b" role="tab" aria-controls="{{amplicon_name}}_3b" aria-selected="false">Indels</a>
  						  </li>
            {% endif %}
  						</ul>
  					</div>
  					<div class='card-body'>
  						<div class="tab-content" id="pills-tabContent">
						{% if report_data['fig_locs'][amplicon_name]['plot_3a'] %}
  						  <div class="tab-pane fade show active" id="{{amplicon_name}}_3a" role="tabpanel">
							  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_3a']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_3a']}}.png" width='40%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_3a']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_3a'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
  							</div>
						{% endif %}

						{% if report_data['fig_locs'][amplicon_name]['plot_3b'] %}
  						  <div class="tab-pane fade" id="{{amplicon_name}}_3b" role="tabpanel">
							  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_3b']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_3b']}}.png" width='95%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_3b']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_3b'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						{% endif %}
  							</div>
  						</div> {# end card_body #}
  				</div> {# end card #}

  				<div class='card text-center mb-2'>
  					<div class='card-header'>
							{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
  						<h5>Indel characterization</h5>
							{% else %}
  						<h5>Indel characterization for {{amplicon_name}}</h5>
							{% endif %}
  						<ul class="nav nav-tabs justify-content-center card-header-tabs" id="aln-tab" role="tablist">
						{% if report_data['fig_locs'][amplicon_name]['plot_4a'] %}
  						  <li class="nav-item">
						  <a class="nav-link" data-toggle="tab" href="#{{amplicon_name}}_4a" role="tab" aria-controls="{{amplicon_name}}_4a" aria-selected="true">All Modifications Combined</a>
  						  </li>
            {% endif %}
						{% if report_data['fig_locs'][amplicon_name]['plot_4b'] %}
  						  <li class="nav-item">
						  <a class="nav-link active" data-toggle="tab" href="#{{amplicon_name}}_4b" role="tab" aria-controls="{{amplicon_name}}_4b" aria-selected="false">All Modifications by Type</a>
  						  </li>
            {% endif %}
						{% if report_data['fig_locs'][amplicon_name]['plot_4c'] %}
  						  <li class="nav-item">
						  <a class="nav-link" data-toggle="tab" href="#{{amplicon_name}}_4c" role="tab" aria-controls="{{amplicon_name}}_4c" aria-selected="false">Modifications in Quantification Window</a>
  						  </li>
            {% endif %}
						{% if report_data['fig_locs'][amplicon_name]['plot_4d'] %}
  						  <li class="nav-item">
						  <a class="nav-link" data-toggle="tab" href="#{{amplicon_name}}_4d" role="tab" aria-controls="{{amplicon_name}}_4d" aria-selected="false">Indel Lengths</a>
  						  </li>
            {% endif %}
						{% if report_data['fig_locs'][amplicon_name]['plot_4e'] %}
  						  <li class="nav-item">
						  <a class="nav-link" data-toggle="tab" href="#{{amplicon_name}}_4e" role="tab" aria-controls="{{amplicon_name}}_4e" aria-selected="false">All reads aligned to {{amplicon_name}}</a>
  						  </li>
            {% endif %}
						{% if report_data['fig_locs'][amplicon_name]['plot_4f'] %}
  						  <li class="nav-item">
						  <a class="nav-link" data-toggle="tab" href="#{{amplicon_name}}_4f" role="tab" aria-controls="{{amplicon_name}}_4f" aria-selected="false">HDR reads aligned to {{amplicon_name}}</a>
  						  </li>
            {% endif %}
  						</ul>
  					</div> {# end card head #}
  					<div class='card-body'>
  						<div class="tab-content" id="pills-tabContent">
						{% if report_data['fig_locs'][amplicon_name]['plot_4a'] %}
							  <div class="tab-pane fade" id="{{amplicon_name}}_4a" role="tabpanel">
								  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4a']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4a']}}.png" width='50%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_4a']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_4a'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						{% endif %}
						{% if report_data['fig_locs'][amplicon_name]['plot_4b'] %}
							  <div class="tab-pane fade show active" id="{{amplicon_name}}_4b" role="tabpanel">
								  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4b']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4b']}}.png" width='50%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_4b']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_4b'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						{% endif %}
						{% if report_data['fig_locs'][amplicon_name]['plot_4c'] %}
							  <div class="tab-pane fade" id="{{amplicon_name}}_4c" role="tabpanel">
								  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4c']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4c']}}.png" width='50%' ></a>

								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_4c']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_4c'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						{% endif %}

						{% if report_data['fig_locs'][amplicon_name]['plot_4d'] %}
							  <div class="tab-pane fade" id="{{amplicon_name}}_4d" role="tabpanel">
								  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4d']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4d']}}.png" width='100%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_4d']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_4d'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						{% endif %}

						{% if report_data['fig_locs'][amplicon_name]['plot_4e'] %}
							  <div class="tab-pane fade" id="{{amplicon_name}}_4e" role="tabpanel">
								  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4e']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4e']}}.png" width='50%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_4e']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_4e'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						{% endif %}

						{% if report_data['fig_locs'][amplicon_name]['plot_4f'] %}
							  <div class="tab-pane fade" id="{{amplicon_name}}_4f" role="tabpanel">
								  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4f']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_4f']}}.png" width='50%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_4f']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_4f'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						{% endif %}
  							</div>
  						</div> {# end card body #}
  				</div> {# end card #}


						{% if report_data['fig_locs'][amplicon_name]['plot_5'] %}
							<div class='card text-center mb-2'>
								<div class='card-header'>
							{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
									<h5>Frameshift analysis</h5>
							{% else %}
  						<h5>Frameshift analysis for {{amplicon_name}}</h5>
							{% endif %}
								</div>
  					<div class='card-body'>
						<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_5']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_5']}}.png" width='70%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_5']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_5'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						</div>
						{% endif %}

						{% if report_data['fig_locs'][amplicon_name]['plot_6'] %}
							<div class='card text-center mb-2'>
								<div class='card-header'>
							{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
									<h5>Frameshift mutagenesis profiles</h5>
							{% else %}
  						<h5>Frameshift mutagenesis profiles for {{amplicon_name}}</h5>
							{% endif %}
								</div>
  					<div class='card-body'>
						<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_6']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_6']}}.png" width='95%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_6']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_6'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						</div>
						{% endif %}

						{% if report_data['fig_locs'][amplicon_name]['plot_7'] %}
							<div class='card text-center mb-2'>
								<div class='card-header'>
							{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
									<h5>Non-coding mutations</h5>
							{% else %}
  						<h5>Coding mutations for {{amplicon_name}}</h5>
							{% endif %}
								</div>
  					<div class='card-body'>
						<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_7']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_7']}}.png" width='40%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_7']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_7'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						</div>
						{% endif %}

						{% if report_data['fig_locs'][amplicon_name]['plot_8'] %}
							<div class='card text-center mb-2'>
								<div class='card-header'>
							{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
									<h5>Splicing</h5>
							{% else %}
  						<h5>Splicing for {{amplicon_name}}</h5>
							{% endif %}
								</div>
  					<div class='card-body'>
						<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_8']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_8']}}.png" width='80%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_8']}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_8'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
							</div>
						</div>
						{% endif %}


				{% if report_data['sgRNA_based_fig_names'][amplicon_name] and  report_data['sgRNA_based_fig_names'][amplicon_name]['9']%}
				<div class='card text-center mb-2'>
					<div class='card-header'>
							{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
						<h5>Allele plots</h5>
							{% else %}
  						<h5>Allele plots for {{amplicon_name}}</h5>
							{% endif %}
					</div>
					<div class='card-body'>
								{% for fig_name in report_data['sgRNA_based_fig_names'][amplicon_name]['9'] %}
                  <div class='mb-4'>
			  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.png" width='95%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name][fig_name]}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name][fig_name] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
                </div>
							{% endfor %}
						</div>
					</div>
					{% endif %}

					{% if report_data['fig_locs'][amplicon_name]['plot_10a'] %}
  				<div class='card text-center mb-2'>
  					<div class='card-header'>
							{% if report_data.amplicons|length == 1 %} {# if only one amplicon #}
						<h5>Base editing</h5>
							{% else %}
  						<h5>Base editing for {{amplicon_name}}</h5>
							{% endif %}
  						<ul class="nav nav-tabs justify-content-center card-header-tabs" id="aln-tab" role="tablist">
						{% if report_data['fig_locs'][amplicon_name]['plot_10a'] %}
  						  <li class="nav-item">
						  <a class="nav-link active" data-toggle="tab" href="#{{amplicon_name}}_10a" role="tab" aria-controls="{{amplicon_name}}_10a" aria-selected="true">Substitution Frequencies</a>
  						  </li>
            {% endif %}
						{% if report_data['sgRNA_based_fig_names'][amplicon_name] and report_data['sgRNA_based_fig_names'][amplicon_name]['10d']%}
  						  <li class="nav-item">
						  <a class="nav-link" data-toggle="tab" href="#{{amplicon_name}}_10d" role="tab" aria-controls="{{amplicon_name}}_10d" aria-selected="false">Nucleotide Frequencies</a>
  						  </li>
            {% endif %}
						{% if report_data['sgRNA_based_fig_names'][amplicon_name] and report_data['sgRNA_based_fig_names'][amplicon_name]['10e']%}
  						  <li class="nav-item">
						  <a class="nav-link" data-toggle="tab" href="#{{amplicon_name}}_10e" role="tab" aria-controls="{{amplicon_name}}_10e" aria-selected="false">Base Proportions</a>
  						  </li>
            {% endif %}
						{% if report_data['sgRNA_based_fig_names'][amplicon_name] and report_data['sgRNA_based_fig_names'][amplicon_name]['10f']%}
  						  <li class="nav-item">
						  <a class="nav-link" data-toggle="tab" href="#{{amplicon_name}}_10f" role="tab" aria-controls="{{amplicon_name}}_10f" aria-selected="false">Non-reference Bases</a>
  						  </li>
            {% endif %}
  						</ul>
  					</div>
  					<div class='card-body'>
  						<div class="tab-content" id="pills-tabContent">
						{% if report_data['fig_locs'][amplicon_name]['plot_10c'] %}
							  <div class="tab-pane fade show active" id="{{amplicon_name}}_10a" role="tabpanel">
                <div class='mb-3'>
			<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10a']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10a']}}.png" width='70%' ></a>
  								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_10a']}}</label>
  							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_10a'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                  {% endfor %}
                </div>
                <div>
			<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10b']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10b']}}.png" width='35%' ></a>
			<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10c']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10c']}}.png" width='35%' ></a>
								<label class="labelpadding">Figures 10a,b: Substitution frequencies across the entire amplicon (left) and in the quantification window (right).</label>
  							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_10b'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                  {% endfor %}
  							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_10c'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                  {% endfor %}
                </div>
							</div>
						{% else %}
						  <div class="tab-pane fade show active" id="{{amplicon_name}}_10a" role="tabpanel">
                <div class='mb-3'>
			<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10a']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10a']}}.png" width='70%' ></a>
  								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_10a']}}</label>
  							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_10a'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                  {% endfor %}
                </div>
                <div>
			<a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10b']}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name]['plot_10b']}}.png" width='35%' ></a>
  								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name]['plot_10b']}}</label>
  							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name]['plot_10b'] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                  {% endfor %}
                </div>
  						</div>
						{% endif %}
						{% if report_data['sgRNA_based_fig_names'][amplicon_name] and report_data['sgRNA_based_fig_names'][amplicon_name]['10d']%}
							  <div class="tab-pane fade" id="{{amplicon_name}}_10d" role="tabpanel">
  								{% for fig_name in report_data['sgRNA_based_fig_names'][amplicon_name]['10d'] %}
                  <div class='mb-4'>
			  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.png" width='95%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name][fig_name]}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name][fig_name] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
  							</div>
  								{% endfor %}
              </div>
						{% endif %}
						{% if report_data['sgRNA_based_fig_names'][amplicon_name] and report_data['sgRNA_based_fig_names'][amplicon_name]['10e']%}
							  <div class="tab-pane fade" id="{{amplicon_name}}_10e" role="tabpanel">
  								{% for fig_name in report_data['sgRNA_based_fig_names'][amplicon_name]['10e'] %}
                  <div class='mb-4'>
			  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.png" width='95%' ></a>
								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name][fig_name]}}</label>
							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name][fig_name] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                {% endfor %}
  							</div>
								{% endfor %}
              </div>
						{% endif %}

						{% if report_data['sgRNA_based_fig_names'][amplicon_name] and report_data['sgRNA_based_fig_names'][amplicon_name]['10f']%}
							  <div class="tab-pane fade" id="{{amplicon_name}}_10f" role="tabpanel">
  								{% for fig_name in report_data['sgRNA_based_fig_names'][amplicon_name]['10f'] %}
                  <div class='mb-4'>
			  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.png" width='95%' ></a>
    								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name][fig_name]}}</label>
    							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name][fig_name] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                    {% endfor %}
                  </div>
  								{% endfor %}

  								{% for fig_name in report_data['sgRNA_based_fig_names'][amplicon_name]['10g'] %}
                  <div class='mb-4'>
			  <a href="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.pdf"><img src="{{report_data['crispresso_data_path']}}{{report_data['fig_locs'][amplicon_name][fig_name]}}.png" width='95%' ></a>
    								<label class="labelpadding">{{report_data['fig_captions'][amplicon_name][fig_name]}}</label>
    							  {% for (data_label,data_path) in report_data['fig_datas'][amplicon_name][fig_name] %}
							  <p class="m-0"><small>Data: <a href="{{report_data['crispresso_data_path']}}{{data_path}}">{{data_label}}</a></small></p>
                    {% endfor %}
                    </div>
  								{% endfor %}
  							</div>
              </div>
						{% endif %}

  							</div>
  				</div> {# end card #}
					{% endif %} {# end base editing card #}
				</div> {# end this amplicon tab #} <!--end amp tab -->

					{% endfor %}
				</div> {# tab content #} <!-- end tab content -->

			</div> <!-- end card -->

	</div> {# jumbotron_content #} <!-- end jumbotron_content -->
</div> {# jumbrotron #} <!-- end jumbotron -->

</div> {# column #} <!-- end column -->

<div class="col-sm-1"></div>
{% endblock %}

{% block foot %}
<script>
function updateZoom(e) {
  /*prevent any other actions that may occur when moving over the image:*/
//  e.preventDefault();
  var img = e.target.imgObj
  var view = e.target.viewObj
  var lens = e.target.lensObj

  if (!lens.hasWidthSet)
  {
    view_height = $('#'+view.id).height()
    view_width = $('#'+view.id).width()
    img_height = $('#'+img.id).height()
    img_width = $('#'+img.id).width()
    lens_height = $('#'+lens.id).height()
    lens_width = $('#'+lens.id).width()

    new_width = img_height * view_width/view_height  //make up for loss of precision
    $('#'+lens.id).outerWidth(new_width)
    lens.hasWidthSet = true

    cx = view_width / new_width

    view.view_height = view_height
    view.view_width = view_width
    img.img_height = img_height
    img.img_width = img_width
    lens.lens_height = lens_height
    lens.lens_width = new_width

  }

  var pos, x, y;
  /*get the cursor's x and y positions:*/
  pos = getCursorPos(e,img);
  /*calculate the position of the lens:*/
  x = pos.x - (lens.lens_width / 2);
  /*prevent the lens from being positioned outside the image:*/
  if (x > img.img_width - lens.lens_width) {x = img.img_width - lens.lens_width;;
  }
  if (x < 0) {x = 0;}
  lens.style.left = x + "px";
  view.style.backgroundPosition = "-" + (x * cx) + "px 0px";
}

function getCursorPos(e,img) {
  var a, x = 0, y = 0;
  e = e || window.event;
  /*get the x and y positions of the image:*/
  a = img.getBoundingClientRect();
  /*calculate the cursor's x and y coordinates, relative to the image:*/
  x = e.pageX - a.left;
  y = e.pageY - a.top;
  /*consider any page scrolling:*/
  x = x - window.pageXOffset;
  y = y - window.pageYOffset;
  return {x : x, y : y};
}

var passiveSupported = false;
try {
  var options = {
    get passive() { // This function will be called when the browser
                    //   attempts to access the passive property.
      passiveSupported = true;
    }
  };

  window.addEventListener("test", options, options);
  window.removeEventListener("test", options, options);
} catch(err) {
  passiveSupported = false;
}

	{% for amplicon_name in report_data.amplicons %}
		{% if report_data['fig_locs'][amplicon_name]['plot_2a'] %}
		view = document.getElementById('zoomview_nucs_{{amplicon_name}}');
		img = document.getElementById('tozoom_nucs_{{amplicon_name}}');
		lens = document.getElementById('zoomlens_nucs_{{amplicon_name}}')

		img.viewObj = view
		img.lensObj = lens
		img.imgObj = img

		lens.viewObj = view
		lens.lensObj = lens
		lens.imgObj = img

		lens.addEventListener("mousemove", updateZoom, passiveSupported? { passive: true } : false);
		img.addEventListener("mousemove", updateZoom, passiveSupported? { passive: true } : false);
		/*and also for touch screens:*/
		lens.addEventListener("touchmove", updateZoom, passiveSupported? { passive: true } : false);
		img.addEventListener("touchmove", updateZoom, passiveSupported? { passive: true } : false);

		{% endif %}
	{% endfor %}
	</script>
{% endblock %}
